Keyword Analysis & Research: yasara protein


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What is YASARA?

YASARA is a molecular-graphics, -modeling and -simulation program that finally makes it really easy to answer your biological questions. The 3D graphics and intuitive interface make it a very user-friendly protein and nucleic acid analysis package. It is also easily extendable by means of plugins.

What is the difference between fatfoldx and YASARA?

FoldX is widely used to predict the effect of mutations on the stability of a protein or to predict the effect on protein-protein binding. YASARA is a molecular-graphics, -modeling and -simulation program that finally makes it really easy to answer your biological questions.

How do I perform analysis of the molecules in YASARA?

You can manipulate the view and perform analysis of the molecules in YASARA through two methods: the Console and the Menu system ( 2.4 ). The console can be accessed by pressing the Space Bar. The console will appear at the bottom of the program window as shown in Figure 2.3.

What happens after the mutation design in YASARA?

After the mutation design the Repaired structure (if selected) and all the runs of the mutations will be loaded into YASARA as new Objects. All of these will be structurally aligned (superposition) for direct comparison (see screenshot below).

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